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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV1130658 SARS-CoV-2/environment/BRA/FPOLIS-sewage-02/2020 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene MT925974 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2020-02-20 wastewater metagenome    277 2021-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D. Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina 277 100.00
OEAV1130659 SARS-CoV-2/environment/BRA/FPOLIS-sewage-02/2020 surface glycoprotein (S) gene MT925978 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2020-02-20 wastewater metagenome    107 2021-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D. Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina 107 100.00
OEAV1130660 SARS-CoV-2/environment/BRA/FPOLIS-sewage-03/2020 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene MT925975 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2020-03-04 wastewater metagenome    277 2021-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D. Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina 277 100.00
OEAV1130661 SARS-CoV-2/environment/BRA/FPOLIS-sewage-03/2020 surface glycoprotein (S) gene MT925979 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2020-03-04 wastewater metagenome    107 2021-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D. Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina 107 100.00
OEAV1130662 SARS-CoV-2/environment/BRA/FPOLIS-sewage-11/2019 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene MT925972 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2019-11-27 wastewater metagenome    277 2021-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D. Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina 277 100.00
OEAV1130663 SARS-CoV-2/environment/BRA/FPOLIS-sewage-11/2019 surface glycoprotein (S) gene MT925976 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2019-11-27 wastewater metagenome    107 2021-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D. Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina 107 100.00
OEAV1130664 SARS-CoV-2/environment/BRA/FPOLIS-sewage-12/2019 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene MT925973 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2019-12-11 wastewater metagenome    277 2021-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D. Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina 277 100.00
OEAV1130665 SARS-CoV-2/environment/BRA/FPOLIS-sewage-12/2019 surface glycoprotein (S) gene MT925977 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2019-12-11 wastewater metagenome    107 2021-03-29 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D. Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina 107 100.00
OEAV3786807 SARS-CoV-2/Wastewater/HRV/PV53-PV55-PV57-PV64/2021 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene OK085824 RNA viruses Severe acute respiratory syndrome coronavirus 2 Croatia 2021-01-02 wastewater metagenome    330 2021-09-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Brnic,D., Lojkic,I. and Jemersic,L. Veterinary Public Health, Croatian Veterinary Institute 330 100.00
OEAV6117008 SARS-CoV-2/Wastewater sample/CHE/Bellinzona_2020_02_27_A/2020 surface glycoprotein (S) gene OM501598 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-02-27 Wastewater sample 293 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 293 100.00
OEAV6117009 SARS-CoV-2/Wastewater sample/CHE/Bellinzona_2020_03_05_B/2020 surface glycoprotein (S) gene OM501599 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-03-05 Wastewater sample 290 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 290 100.00
OEAV6117010 SARS-CoV-2/Wastewater sample/CHE/Biasca_2020_03_01_B/2020 surface glycoprotein (S) gene OM501600 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-03-01 Wastewater sample 301 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 300 99.67
OEAV6117011 SARS-CoV-2/Wastewater sample/CHE/Biasca_2020_03_08_A/2020 surface glycoprotein (S) gene OM501601 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-03-08 Wastewater sample 270 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 268 99.26
OEAV6117012 SARS-CoV-2/Wastewater sample/CHE/Chiasso_2020_02_29_B/2020 surface glycoprotein (S) gene OM501592 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-02-29 Wastewater sample 310 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 310 100.00
OEAV6117013 SARS-CoV-2/Wastewater sample/CHE/Locarno_2020_03_01_B/2020 surface glycoprotein (S) gene OM501602 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-03-01 Wastewater sample 326 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 326 100.00
OEAV6117014 SARS-CoV-2/Wastewater sample/CHE/Mendrisio_2020_02_28_B/2020 surface glycoprotein (S) gene OM501593 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-02-28 Wastewater sample 316 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 314 99.37
OEAV6117015 SARS-CoV-2/Wastewater sample/CHE/Mendrisio_2020_02_29_A/2020 surface glycoprotein (S) gene OM501594 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-02-29 Wastewater sample 326 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 326 100.00
OEAV6117016 SARS-CoV-2/Wastewater sample/CHE/Mendrisio_2020_03_02_B/2020 surface glycoprotein (S) gene OM501595 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-03-02 Wastewater sample 326 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 326 100.00
OEAV6117017 SARS-CoV-2/Wastewater sample/CHE/Scairolo_2020_02_27_B/2020 surface glycoprotein (S) gene OM501596 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-02-27 Wastewater sample 247 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 244 98.79
OEAV6117018 SARS-CoV-2/Wastewater sample/CHE/Scairolo_2020_02_28_B/2020 surface glycoprotein (S) gene OM501597 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-02-28 Wastewater sample 238 2022-02-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cariti,F. LCE, EPFL LCE, EPFL ENAC IIE LCE GR A1 CM 1 119 (Centre Midi) Station 2 CH - 1015 Lausanne, Lausanne, Lausanne 1015, Switzerland 235 98.74
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